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Publications and conferences

EyeDB Papers

• The EyeDB OODBMS.
  E. Viara, E. Barillot & G. Vaysseix;
  International Database Engineering and Applications Symposium 1999, Montreal August 1999, IEEE publications, pp 390-402, 1999.


• Distributing CORBA Views From an OODBMS.
  E. Viara, E. Barillot and G. Vaysseix, International Database Engineering and Applications Symposium 2002, Edmonton July 2002, IEEE publications, pp 116-129, 2002.

Projects using EyeDB

• The IDB database system and its use in the human genome project: HUGEMAP.
  E. Viara, S. Pook, B. Lacroix, M. Tissot, L. Atlan, A. Cohen-Akenine, G. Vaysseix & E. Barillot;
  Interconnection of Molecular Biology Databases, Stanford, California, 1994.


• RHmap, a radiation hybrid database for heavy user access and a test case for comparing relational and object oriented technologies.
  P. Rodriguez-Tomé, G. Vaysseix, E. Viara & E. Barillot;
  Interconnection of Molecular Biology Databases, Cambridge, United Kingdom, 1995.


• Solutions to the interoperation of biological databases.
  E. Barillot, G. Vaysseix, F. Achard, E. Viara, T. Flores & P. Rodriguez-Tomé;
  Human Genome Meeting, Heidelberg, Germany, 1996.


• RHYME: An Implementation of Database Interoperation in Molecular Biology based on distributed and architecture-independant techniques.
  E. Barillot, F. Guyon, E. Viara & G. Vaysseix;
  Human Genome Meeting, Toronto, Canada, 1997.


• HuGeMap: a distributed and integrated Human Genome Map database.
  E. Barillot, F. Guyon, C. Cussat-Blanc, E. Viara & G. Vaysseix;
  Nucleic Acids Research, Vol. 26, pp 106-107, 1998.


• Virgil: a database of rich links between GDB and Genbank.
  F. Achard & E. Barillot;
  Nucleic Acids Research, Vol. 26, pp 100-101, 1998.


• The new Virgil database: a service of rich links.
  F. Achard, C. Cussat-Blanc, E. Viara & E. Barillot;
  BIOINFORMATICS, Vol. 14, pp 342-348, 1998.


• A standard representation for links between genome objects
  F. Achard, C. Cussat-Blanc, E. Viara, G. Vaysseix, P. Dessen and E. Barillot, Human Genome Meeting, Turin, Italy, 1998.


• Zomit: biological data visualisation and browsing.
  S. Pook, G. Vaysseix & E. Barillot
  BIOINFORMATICS, Vol. 14 No. 9, pp 807-814, 1998.


• Virgil: a databank of links between GDB and Genbank.
  BIOINFORMATICS, Vol. 14, 342-348, 1998. F. Achard & E. Barillot;


• Distributing and visualising biological objects at Infobiogen.
  E. Viara, S. Pook, F. Guyon, C. Cussat-Blanc, G. Vaysseix & E. Barillot>;
  Objects In Bioinformatics, Hinxton, 1998.


• The HuGeMap database: Interconnection and Visualisation of Human Genome Maps.
  E. Barillot, S. Pook, F. Guyon, C. Cussat-Blanc, E. Viara & G. Vaysseix;
  Nucleic Acids Research, in press, 1999.


• Virgil database for rich links (1999 update).
  F. Achard, G. Vaysseix, P. Dessen & E. Barillot;
  Nucleic Acids Research, in press, 1999.
  


• The Genetpig database: a tool for comparative mapping in pig (Sus scrofa).
  E. Karsenty, E. Barillot, G. Tosser-Klopp, Y. Lahbib-Mansais, F. Hatey, S. Cirera, M. Fredholm, B. Chowdhary, C. B. Jørgensen, M. Sawera, K. Wimmers, S. Ponsuksili, R. Davoli, L. Fontanesi, S. Braglia, P. Zambonelli, D. Bigi, S. Neuenschwander and J. Gellin. Nucleic Acids Research 2003 Jan 1;31(1):138-41.